Genome Annotation with Apollo (Jul 2024)

Genome annotation is crucial to defining the function of genomic sequences. This process typically involves a round of automated annotation followed by manual curation. Manual curation allows you to visualise your annotations so you can understand what your organism looks like, and then to manually refine these annotations along with any additional data you might have. This process is typically performed collaboratively as part of a team effort.

Apollo is a popular tool for facilitating real-time collaborative, manual curation and genome annotation editing. In this workshop we will learn how to use Apollo to refine genome annotations using example data from an E. coli strain. We’ll focus on the basics like getting data into Apollo, viewing evidence tracks, editing and adding structural and functional annotation, visualising the results and collaborating on genome annotations.

FAQs

What should I bring into the event?

This is an online workshop, so you will need to provide your own computer and have access to a reliable internet connection sufficient for video conferencing. A second monitor is highly recommended.

What prior experience do I need?

You should be familiar with the concepts of genome annotation.

Who should attend?

This workshop is for Australian researchers who are or will soon be working on genome annotation and manual curation/editing as part of their projects.

How can I contact the organiser with any questions?

You can email training@qcif.edu.au

What's the cancellation policy?

Cancellations are accepted up to three working days before the start of the workshop. If you do not join on the day without having cancelled beforehand, you may be blocked from attending any future QCIF training workshops.