This workshop introduces ProteinDJ, a high-throughput protein design platform built with Nextflow, and demonstrates its application to de novo binder design. Participants will receive a brief overview of binder design principles and containerised workflows, followed by hands-on experience interacting with Nextflow and ProteinDJ via VS Code and the command line.

We will prepare an example target protein for binder design and examine how to curate generated designs using key metrics and filtering strategies. While there will not be time to run full design campaigns for individual targets, you will leave with the practical skills needed to set up and execute your own binder design runs.

Requirements: Access to M3 (mc12 project).

Only CCeMMP members/affiliates can attend.

Contact the host of Using ProteinDJ to design de novo protein binders